英語 での Molecular dynamics の使用例とその 日本語 への翻訳
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Traditionally, the bonding state between H2O molecules in ice and their functions were difficult to directly observe and were therefore analyzed by molecular dynamics simulations, namely, by simulating the mutual interaction between virtual atoms and its mechanism using a computer.
Recently, however, scientists have succeeded in directly observing the structure and functions of ice in a high-precision Compton scattering experiment using the high-energy inelastic scattering beamline(BL08W) at SPring-8, verifying the accuracy of molecular dynamics simulations.
We are very pleased to announce that Prof. Baltuska in Vienna University of Technology is going to give a lecture about strong field science from the basics to the cutting edge, in particular, attosecond science and molecular dynamics in strong fields.
Molecular dynamics simulation of NiO reduction using ReaxFF. Multiscale simulation of structural polymer materials and composites(ImPACT) As the application of plastic composite materials to automobiles and airplanes is getting more and more accelerated these days, it is urged to establish guidelines for designing polymer materials possessing both high strength and toughness.
High-precision activity prediction technology: Software developed by Fujitsu Laboratories, comprised of MAPLECAFEE, a module that, based on molecular dynamics calculations, predicts the inhibitory activity of drug candidate compounds with a high level of precision that is equivalent to that of biochemical assays, and Force Field Formulator for Organic Molecules(FF-FOM), a module that generates highly detailed parameters for calculating the forces between atoms.
The workload packages cover molecular dynamics, quantum chemistry, and climate modeling which cover the popular industrial applications used today. The HPC/DL Software Stack: Pre-built with HPC integration in mind with a goal to provide re-usable building blocks for the HPC community.
Dr. Yusuke Matsunaga from the Molecular Scale Team described Molecular Dynamics(MD) simulation, especially how to deal with long-range forces, and introduced the platypus-MM/CG under development. Dr. Yosuke Ohno from the High-performance Computing Team explained MD speed-up techniques particularly for short-range forces by giving useful examples with the K computer.
At the achievement report session held on the second day, 15 SCLS researchers reported the latest research achievements attained through use of the K computer, such as analysis of intercellular molecular dynamics based on molecular dynamics simulation, prediction of binding of drug development candidate compounds based on high-precision binding free energy calculation, hierarchical integrated simulation, and exhaustive analysis of abnormalities in cancer, and received a great response from the attendees.
Molecular dynamics simulation.
Background in physics and molecular dynamics simulations.
Dot pattern generation technique using molecular dynamics,”.
Connection of the coarse-grained molecular dynamics and the slip-link model.
Free energy calculation combined with molecular dynamics simulation- Torrent Web.
Analyses of molecular dynamics, cellular function and pathogenesis by two-photon microscopy.
Molecular Simulation Active workflow performs modelling, docking and MD(molecular dynamics).
Lipid bilayer analysis and molecular dynamics simulation analysis of ion permeation-.
Design and evaluation using molecular dynamics simulation in development of Cupid-Psyche systems.
A02-5: Studies on structured sampling and non-equilibrium dynamics using ab initio molecular dynamics methods.
Petaflops special-purpose computer for molecular dynamics simulations and its application to protein science.
Analysis of CICR control mechanism using molecular dynamics simulation and malignant hyperthermia model mouse.